PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22122-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 78aa    MW: 8699.69 Da    PI: 6.5276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22122-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-101357344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W++ E +l+ +a + +G g   +W +++r mg ++t+ +++ ++
  TRIUR3_22122-P1 13 AWSAKENKLFEEALAYHGEGtpdRWLKVSRAMGGTKTADEVRRHY 57
                     6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-61063IPR001005SANT/Myb domain
CDDcd001677.65E-61357No hitNo description
Gene3DG3DSA:1.10.10.605.0E-41359IPR009057Homeodomain-like
SuperFamilySSF466893.51E-121369IPR009057Homeodomain-like
PfamPF002493.3E-81357IPR001005SANT/Myb domain
PROSITE profilePS500906.6441461IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MSGSSSRGGD DAAWSAKENK LFEEALAYHG EGTPDRWLKV SRAMGGTKTA DEVRRHYEIL  60
VDDINLIESG RVPFPKYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-24578274RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-110HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.13e-36PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS33e-25RAD_ANTMA; Transcription factor RADIALIS
TrEMBLT1MVV72e-52T1MVV7_TRIUA; Uncharacterized protein
STRINGMLOC_75951.13e-40(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-23RAD-like 1